Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine repressor | DWZ06_17895 | Not Available | Negative | 4291259 - 4291735 | 17529.3 |
| rhamnulokinase | DWZ06_17900 | Not Available | Positive | 4292042 - 4293520 | 55006.8 |
| l-rhamnose isomerase | DWZ06_17905 | Not Available | Positive | 4293560 - 4294816 | 47536.4 |
| l-rhamnose/proton symporter rhat | DWZ06_17910 | Not Available | Positive | 4294909 - 4295928 | 36173.2 |
| rhamnulose-1-phosphate aldolase | DWZ06_17915 | Not Available | Positive | 4296014 - 4296823 | 30253.7 |
| duf4251 domain-containing protein | DWZ06_17920 | Not Available | Positive | 4297032 - 4297529 | 18510.1 |
| arac family transcriptional regulator | DWZ06_17925 | Not Available | Positive | 4297660 - 4298580 | 35143.8 |
| lytic transglycosylase domain-containing protein | DWZ06_17930 | Not Available | Positive | 4298588 - 4299586 | 37375.8 |
| ion transporter | DWZ06_17935 | Not Available | Negative | 4299612 - 4300469 | 32741.9 |
| duf4981 domain-containing protein | DWZ06_17940 | Not Available | Positive | 4300585 - 4303680 | 117529.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

