Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DWZ06_17845 | Not Available | Positive | 4280867 - 4282882 | 75817.1 |
| hypothetical protein | DWZ06_17850 | Not Available | Positive | 4283097 - 4283360 | 9982.04 |
| glycoside hydrolase | DWZ06_17855 | Not Available | Negative | 4283381 - 4284895 | 55607.4 |
| hypothetical protein | DWZ06_17860 | Not Available | Positive | 4285005 - 4285235 | 9100.76 |
| arac family transcriptional regulator | DWZ06_17865 | Not Available | Negative | 4285228 - 4286118 | 34355.3 |
| pyrroline-5-carboxylate reductase | DWZ06_17870 | Not Available | Negative | 4286301 - 4287074 | 27247.4 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DWZ06_17875 | Not Available | Negative | 4287258 - 4288382 | 40936.8 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DWZ06_17880 | Not Available | Negative | 4288396 - 4289364 | 36000.4 |
| argininosuccinate synthase | DWZ06_17885 | Not Available | Negative | 4289370 - 4290578 | 45126.7 |
| n-acetyltransferase | DWZ06_17890 | Not Available | Negative | 4290679 - 4291236 | 20661.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

