Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ06_17785 | Not Available | Negative | 4263183 - 4263998 | 31074.5 |
| hypothetical protein | DWZ06_17790 | Not Available | Negative | 4264007 - 4264693 | 25460.4 |
| hypothetical protein | DWZ06_17795 | Not Available | Positive | 4264853 - 4265548 | 26719.6 |
| rna polymerase sigma-70 factor | DWZ06_17805 | Not Available | Positive | 4268069 - 4268644 | 22518.4 |
| duf4974 domain-containing protein | DWZ06_17810 | Not Available | Positive | 4268673 - 4269665 | 38023.8 |
| glycoside hydrolase family 92 protein | DWZ06_17815 | Not Available | Positive | 4269683 - 4271965 | 86472.6 |
| glycoside hydrolase family 92 protein | DWZ06_17820 | Not Available | Positive | 4271995 - 4274307 | 87838.7 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_17830 | Not Available | Positive | 4274596 - 4277997 | 124973.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_17835 | Not Available | Positive | 4278021 - 4279790 | 66868.9 |
| endonuclease | DWZ06_17840 | Not Available | Positive | 4279834 - 4280679 | 31903.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

