Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_17565 | Not Available | Positive | 4214165 - 4215166 | 38242.8 |
| hypothetical protein | DWZ06_17570 | Not Available | Positive | 4215234 - 4216163 | 35526.5 |
| xre family transcriptional regulator | DWZ06_17575 | Not Available | Positive | 4216260 - 4216457 | 7632.48 |
| hypothetical protein | DWZ06_17580 | Not Available | Positive | 4216524 - 4216967 | 17597.9 |
| type i restriction endonuclease subunit r | DWZ06_17585 | Not Available | Positive | 4216977 - 4220213 | 125963.0 |
| sam-dependent dna methyltransferase | DWZ06_17590 | Not Available | Positive | 4220225 - 4221886 | 62200.8 |
| duf1016 domain-containing protein | DWZ06_17595 | Not Available | Positive | 4221879 - 4223006 | 43400.9 |
| hypothetical protein | DWZ06_17600 | Not Available | Positive | 4222987 - 4223421 | 16501.1 |
| crp/fnr family transcriptional regulator | DWZ06_17605 | Not Available | Negative | 4224059 - 4224661 | 23444.3 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_17610 | Not Available | Negative | 4224671 - 4226263 | 60955.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

