Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | DWZ06_17505 | Not Available | Positive | 4202079 - 4202387 | 11785.3 |
| type ii toxin-antitoxin system hipa family toxin | DWZ06_17510 | Not Available | Positive | 4202396 - 4203913 | 58011.6 |
| hnh endonuclease | DWZ06_17520 | Not Available | Positive | 4204134 - 4204988 | 33441.4 |
| tatd family deoxyribonuclease | DWZ06_17525 | Not Available | Negative | 4205133 - 4205822 | 26454.2 |
| hypothetical protein | DWZ06_17530 | Not Available | Negative | 4205819 - 4207234 | 53873.8 |
| hypothetical protein | DWZ06_17535 | Not Available | Negative | 4207219 - 4207968 | 27622.2 |
| kap p-loop protein | DWZ06_17540 | Not Available | Negative | 4207974 - 4209806 | 71906.7 |
| thymidylate synthase | DWZ06_17550 | Not Available | Negative | 4210313 - 4210879 | 22378.9 |
| general stress protein | DWZ06_17555 | Not Available | Negative | 4211015 - 4211695 | 25850.4 |
| glutaredoxin-related protein | DWZ06_17560 | Not Available | Negative | 4212099 - 4212398 | 10921.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

