Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DWZ06_17395 | Not Available | Negative | 4170581 - 4172173 | 59404.7 |
| arylsulfatase | DWZ06_17400 | Not Available | Negative | 4172430 - 4173956 | 57741.4 |
| sulfatase | DWZ06_17405 | Not Available | Negative | 4174067 - 4175488 | 53009.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_17410 | Not Available | Negative | 4175583 - 4177505 | 73144.0 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_17415 | Not Available | Negative | 4177527 - 4181054 | 131455.0 |
| fecr family protein | DWZ06_17420 | Not Available | Negative | 4181119 - 4182129 | 38678.5 |
| rna polymerase sigma-70 factor | DWZ06_17425 | Not Available | Negative | 4182218 - 4182805 | 22777.2 |
| protease | DWZ06_17430 | Not Available | Positive | 4182984 - 4186208 | 120701.0 |
| leucine--trna ligase | DWZ06_17435 | Not Available | Positive | 4186507 - 4189341 | 108308.0 |
| yitt family protein | DWZ06_17440 | Not Available | Positive | 4189423 - 4190319 | 33214.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

