Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-diphosphatase | DWZ06_17345 | Not Available | Negative | 4160473 - 4161273 | 28480.0 |
| duf3098 domain-containing protein | DWZ06_17350 | Not Available | Negative | 4161311 - 4161556 | 9145.44 |
| abc transporter permease | DWZ06_17355 | Not Available | Negative | 4161569 - 4162438 | 32622.6 |
| class i sam-dependent methyltransferase | DWZ06_17360 | Not Available | Negative | 4162441 - 4163307 | 33272.9 |
| pspc domain-containing protein | DWZ06_17365 | Not Available | Positive | 4163475 - 4163711 | 9155.18 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWZ06_17370 | Not Available | Negative | 4163721 - 4164122 | 15118.3 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DWZ06_17375 | Not Available | Negative | 4164122 - 4165492 | 51936.9 |
| hypothetical protein | DWZ06_17380 | Not Available | Positive | 4165830 - 4166180 | 13516.5 |
| acetyl-coa hydrolase/transferase family protein | DWZ06_17385 | Not Available | Positive | 4166218 - 4167711 | 54010.7 |
| glycoside hydrolase family 3 protein | DWZ06_17390 | Not Available | Positive | 4167897 - 4170491 | 96044.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

