Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | DWZ06_17295 | Not Available | Positive | 4146691 - 4148223 | 59302.0 |
| pas domain-containing protein | DWZ06_17300 | Not Available | Negative | 4148350 - 4149672 | 50256.6 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_17305 | Not Available | Negative | 4149678 - 4151009 | 50325.0 |
| tolc family protein | DWZ06_17310 | Not Available | Positive | 4151341 - 4152648 | 50665.0 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_17315 | Not Available | Positive | 4152654 - 4153904 | 47799.6 |
| abc transporter atp-binding protein | DWZ06_17320 | Not Available | Positive | 4153920 - 4154630 | 26379.0 |
| abc transporter permease | DWZ06_17325 | Not Available | Positive | 4154630 - 4157050 | 91877.4 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DWZ06_17330 | Not Available | Negative | 4158229 - 4158675 | 16503.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | DWZ06_17335 | Not Available | Negative | 4158694 - 4159749 | 40193.2 |
| trna pseudouridine(55) synthase trub | DWZ06_17340 | Not Available | Negative | 4159761 - 4160468 | 26653.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

