Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3836 domain-containing protein | DWZ06_17135 | Not Available | Negative | 4118252 - 4118638 | 15047.1 |
| dna polymerase i | DWZ06_17145 | Not Available | Negative | 4118947 - 4121862 | 109257.0 |
| polyprenyl synthetase family protein | DWZ06_17150 | Not Available | Positive | 4121954 - 4122928 | 36285.5 |
| ahpc/tsa family protein | DWZ06_17155 | Not Available | Negative | 4123314 - 4124405 | 40190.0 |
| polyamine abc transporter atp-binding protein | DWZ06_17165 | Not Available | Positive | 4124934 - 4126322 | 51920.3 |
| abc transporter permease | DWZ06_17170 | Not Available | Positive | 4126359 - 4127132 | 28468.5 |
| abc transporter permease | DWZ06_17175 | Not Available | Positive | 4127126 - 4127917 | 28734.3 |
| extracellular solute-binding protein | DWZ06_17180 | Not Available | Positive | 4127945 - 4129255 | 50297.2 |
| ribose-phosphate pyrophosphokinase | DWZ06_17185 | Not Available | Negative | 4129385 - 4130323 | 34190.5 |
| thiamine phosphate synthase | DWZ06_17190 | Not Available | Negative | 4130488 - 4131096 | 22934.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

