Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DWZ06_17080 | Not Available | Positive | 4107487 - 4108074 | 22038.4 |
| hypothetical protein | DWZ06_17085 | Not Available | Positive | 4108117 - 4109784 | 64185.7 |
| port family protein | DWZ06_17090 | Not Available | Positive | 4109919 - 4110608 | 25264.2 |
| hypothetical protein | DWZ06_17095 | Not Available | Negative | 4110774 - 4110953 | 7092.65 |
| tetratricopeptide repeat protein | DWZ06_17100 | Not Available | Positive | 4111175 - 4112833 | 63760.9 |
| hypothetical protein | DWZ06_17105 | Not Available | Positive | 4112950 - 4113195 | 9220.3 |
| porin family protein | DWZ06_17110 | Not Available | Positive | 4113504 - 4114202 | 25718.4 |
| prolipoprotein diacylglyceryl transferase | DWZ06_17120 | Not Available | Negative | 4115096 - 4115917 | 31477.1 |
| ketopantoate reductase family protein | DWZ06_17125 | Not Available | Negative | 4115914 - 4116825 | 33089.2 |
| redox-regulated atpase ychf | DWZ06_17130 | Not Available | Negative | 4116950 - 4118053 | 40815.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

