Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii synthase | DWZ06_17025 | Not Available | Positive | 4094820 - 4095569 | 28649.6 |
| ribonuclease p protein component | DWZ06_17030 | Not Available | Positive | 4095672 - 4096064 | 15158.8 |
| membrane protein insertion efficiency factor yidd | DWZ06_17035 | Not Available | Positive | 4096061 - 4096282 | 8364.46 |
| hydrolase tatd | DWZ06_17040 | Not Available | Positive | 4096297 - 4096926 | 24010.2 |
| tyrosine--trna ligase | DWZ06_17045 | Not Available | Positive | 4097006 - 4098298 | 48043.5 |
| peptidase s41 | DWZ06_17050 | Not Available | Negative | 4098423 - 4101677 | 121882.0 |
| Trna-gln | Not Available | Not Available | Positive | 4101812 - 4101882 | Not Available |
| flavin reductase family protein | DWZ06_17060 | Not Available | Negative | 4102013 - 4102519 | 19380.2 |
| dna mismatch repair protein muts | DWZ06_17065 | Not Available | Positive | 4102638 - 4105250 | 97854.5 |
| glycoside hydrolase | DWZ06_17070 | Not Available | Positive | 4105300 - 4107279 | 75348.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

