Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hepn domain-containing protein | DWZ06_16925 | Not Available | Negative | 4072347 - 4072742 | 15370.6 |
| duf4468 domain-containing protein | DWZ06_16930 | Not Available | Positive | 4072985 - 4073677 | 27056.7 |
| is1595-like element isbvu2 family transposase | DWZ06_16935 | Not Available | Negative | 4074042 - 4074965 | 36160.0 |
| histidine kinase | DWZ06_16940 | Not Available | Positive | 4075154 - 4077172 | 78579.8 |
| dna-binding response regulator | DWZ06_16945 | Not Available | Positive | 4077300 - 4078064 | 29786.5 |
| wg repeat-containing protein | DWZ06_16950 | Not Available | Positive | 4078330 - 4080024 | 63097.2 |
| hypothetical protein | DWZ06_16955 | Not Available | Positive | 4080047 - 4080541 | 18008.1 |
| hypothetical protein | DWZ06_16960 | Not Available | Positive | 4080692 - 4081177 | 18241.8 |
| hypothetical protein | DWZ06_16965 | Not Available | Positive | 4081190 - 4082140 | 35151.2 |
| hypothetical protein | DWZ06_16970 | Not Available | Positive | 4082148 - 4083083 | 34455.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

