Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twin-arginine translocase tata/tate family subunit | DWZ06_16875 | Not Available | Positive | 4061214 - 4061417 | 7242.17 |
| twin-arginine translocase subunit tatc | DWZ06_16880 | Not Available | Positive | 4061424 - 4062254 | 32386.8 |
| alanine dehydrogenase | DWZ06_16885 | Not Available | Negative | 4062341 - 4063432 | 39028.8 |
| m23 family peptidase | DWZ06_16890 | Not Available | Positive | 4063626 - 4065296 | 62545.6 |
| dipeptidase | DWZ06_16895 | Not Available | Positive | 4065339 - 4066979 | 61146.5 |
| phospho-sugar mutase | DWZ06_16900 | Not Available | Positive | 4067293 - 4069038 | 64726.5 |
| eama family transporter | DWZ06_16905 | Not Available | Positive | 4069221 - 4070141 | 34775.9 |
| aldose 1-epimerase family protein | DWZ06_16910 | Not Available | Negative | 4070190 - 4071065 | 33939.7 |
| hypothetical protein | DWZ06_16915 | Not Available | Negative | 4071500 - 4071898 | 14857.1 |
| hypothetical protein | DWZ06_16920 | Not Available | Negative | 4071902 - 4072345 | 17238.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

