Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_16660 | Not Available | Negative | 4005363 - 4005758 | 14967.8 |
| hypothetical protein | DWZ06_16665 | Not Available | Negative | 4005835 - 4007514 | 63365.5 |
| hypothetical protein | DWZ06_16670 | Not Available | Negative | 4007524 - 4008846 | 49429.5 |
| hypothetical protein | DWZ06_16675 | Not Available | Negative | 4009058 - 4010056 | 37421.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ06_16680 | Not Available | Positive | 4010225 - 4011460 | 45637.2 |
| tetr/acrr family transcriptional regulator | DWZ06_16685 | Not Available | Positive | 4011463 - 4012185 | 27874.7 |
| hypothetical protein | DWZ06_16690 | Not Available | Negative | 4012274 - 4012708 | 16497.8 |
| para family protein | DWZ06_16695 | Not Available | Negative | 4012767 - 4013390 | 23398.3 |
| mobilization protein | DWZ06_16700 | Not Available | Negative | 4013407 - 4014969 | 60005.4 |
| plasmid mobilization relaxosome protein mobc | DWZ06_16705 | Not Available | Negative | 4015403 - 4015759 | 14102.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

