Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DWZ06_01625 | Not Available | Positive | 387373 - 388650 | 47021.8 |
| sdr family nad(p)-dependent oxidoreductase | DWZ06_01630 | Not Available | Positive | 388661 - 389389 | 27028.2 |
| site-specific dna-methyltransferase | DWZ06_01635 | Not Available | Positive | 389676 - 391586 | 72472.4 |
| duf4252 domain-containing protein | DWZ06_01645 | Not Available | Positive | 394801 - 395286 | 18464.7 |
| rna polymerase sigma factor | DWZ06_01650 | Not Available | Positive | 395273 - 395785 | 20041.8 |
| hypothetical protein | DWZ06_01655 | Not Available | Positive | 395772 - 396302 | 20186.3 |
| duf4252 domain-containing protein | DWZ06_01660 | Not Available | Positive | 396299 - 396757 | 17333.2 |
| hypothetical protein | DWZ06_01665 | Not Available | Negative | 397012 - 397683 | 23981.6 |
| hypothetical protein | DWZ06_01670 | Not Available | Positive | 398013 - 399812 | 68617.8 |
| hypothetical protein | DWZ06_01675 | Not Available | Negative | 399907 - 400446 | 19772.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

