Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid transfer protein | DWZ06_16510 | Not Available | Positive | 3984298 - 3984972 | 25473.4 |
| hypothetical protein | DWZ06_16515 | Not Available | Positive | 3984974 - 3985630 | 25994.3 |
| plasmid transfer protein | DWZ06_16520 | Not Available | Positive | 3985623 - 3986645 | 37691.8 |
| conjugative transposon protein trak | DWZ06_16525 | Not Available | Positive | 3986678 - 3987292 | 23394.7 |
| hypothetical protein | DWZ06_16530 | Not Available | Positive | 3987292 - 3987723 | 16714.8 |
| conjugative transposon protein tram | DWZ06_16535 | Not Available | Positive | 3987727 - 3988836 | 41780.8 |
| conjugative transposon protein tran | DWZ06_16540 | Not Available | Positive | 3988838 - 3989677 | 32360.3 |
| hypothetical protein | DWZ06_16545 | Not Available | Positive | 3989690 - 3990193 | 19086.8 |
| hypothetical protein | DWZ06_16550 | Not Available | Positive | 3990196 - 3990855 | 23717.9 |
| ompa family protein | DWZ06_16555 | Not Available | Positive | 3990858 - 3991499 | 23821.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

