Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | DWZ06_16410 | Not Available | Positive | 3959294 - 3960181 | 31789.8 |
| abc transporter atp-binding protein | DWZ06_16415 | Not Available | Negative | 3960508 - 3961182 | 24855.1 |
| abc transporter permease | DWZ06_16420 | Not Available | Negative | 3961202 - 3963565 | 90304.1 |
| abc transporter permease | DWZ06_16425 | Not Available | Negative | 3963584 - 3965983 | 91558.7 |
| abc transporter permease | DWZ06_16430 | Not Available | Negative | 3966004 - 3968373 | 90157.9 |
| abc transporter permease | DWZ06_16435 | Not Available | Negative | 3968387 - 3970783 | 92684.7 |
| hlyd family efflux transporter periplasmic adaptor subunit | DWZ06_16440 | Not Available | Negative | 3970794 - 3972044 | 48109.4 |
| tolc family protein | DWZ06_16445 | Not Available | Negative | 3972129 - 3973598 | 55871.3 |
| sel1 repeat family protein | DWZ06_16450 | Not Available | Negative | 3973648 - 3974571 | 34904.6 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_16455 | Not Available | Positive | 3974795 - 3976162 | 51877.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

