Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | DWZ06_16360 | Not Available | Negative | 3946903 - 3948180 | 47461.1 |
| phosphoserine phosphatase serb | DWZ06_16365 | Not Available | Negative | 3948201 - 3949433 | 46069.1 |
| hypothetical protein | DWZ06_16370 | Not Available | Positive | 3949706 - 3950200 | 18386.1 |
| had family phosphatase | DWZ06_16375 | Not Available | Positive | 3950359 - 3950979 | 23419.9 |
| yjgp/yjgq family permease | DWZ06_16380 | Not Available | Negative | 3950980 - 3952152 | 45473.9 |
| trna guanosine(34) transglycosylase tgt | DWZ06_16385 | Not Available | Negative | 3952163 - 3953293 | 42665.6 |
| endopeptidase la | DWZ06_16390 | Not Available | Negative | 3953296 - 3955773 | 92607.4 |
| methyltransferase domain-containing protein | DWZ06_16395 | Not Available | Positive | 3955955 - 3956659 | 26195.4 |
| diacylglycerol kinase family lipid kinase | DWZ06_16400 | Not Available | Negative | 3956740 - 3957774 | 38141.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ06_16405 | Not Available | Positive | 3958019 - 3959206 | 44190.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

