Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1622 domain-containing protein | DWZ06_16310 | Not Available | Negative | 3939011 - 3939352 | 12539.8 |
| alpha-ribazole phosphatase | DWZ06_16315 | Not Available | Negative | 3939404 - 3939934 | 20124.8 |
| adenosylcobinamide-gdp ribazoletransferase | DWZ06_16320 | Not Available | Negative | 3939928 - 3940677 | 27738.7 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | DWZ06_16325 | Not Available | Negative | 3940680 - 3941717 | 37449.5 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | DWZ06_16330 | Not Available | Negative | 3941726 - 3942235 | 19446.2 |
| fha domain-containing protein | DWZ06_16335 | Not Available | Negative | 3942240 - 3942764 | 19818.0 |
| spor domain-containing protein | DWZ06_16340 | Not Available | Negative | 3942780 - 3943910 | 42083.4 |
| udp-glucose/gdp-mannose dehydrogenase family protein | DWZ06_16345 | Not Available | Positive | 3944029 - 3945342 | 48150.3 |
| duf4738 domain-containing protein | DWZ06_16350 | Not Available | Positive | 3945366 - 3946154 | 29405.2 |
| hypothetical protein | DWZ06_16355 | Not Available | Positive | 3946204 - 3946479 | 10175.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

