Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mechanosensitive ion channel family protein | DWZ06_16255 | Not Available | Positive | 3924936 - 3926129 | 45290.0 |
| sensor histidine kinase | DWZ06_16260 | Not Available | Negative | 3926248 - 3927744 | 56817.7 |
| tonb-dependent receptor | DWZ06_16265 | Not Available | Positive | 3927900 - 3930224 | 88535.2 |
| duf1232 domain-containing protein | DWZ06_16270 | Not Available | Positive | 3930369 - 3930731 | 13960.1 |
| tonb-dependent receptor | DWZ06_16275 | Not Available | Positive | 3931171 - 3934416 | 119622.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_16280 | Not Available | Positive | 3934430 - 3935920 | 55858.7 |
| hypothetical protein | DWZ06_16290 | Not Available | Negative | 3936464 - 3937216 | 26809.7 |
| hypothetical protein | DWZ06_16295 | Not Available | Positive | 3937623 - 3937874 | 9377.15 |
| hypothetical protein | DWZ06_16300 | Not Available | Positive | 3937799 - 3938113 | 11797.0 |
| hypothetical protein | DWZ06_16305 | Not Available | Positive | 3938644 - 3938886 | 9308.48 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

