Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein subunit alpha/fixb family protein | DWZ06_16205 | Not Available | Negative | 3913207 - 3914226 | 36698.3 |
| electron transfer flavoprotein beta subunit/fixa family protein | DWZ06_16210 | Not Available | Negative | 3914232 - 3915125 | 31873.2 |
| hypothetical protein | DWZ06_16215 | Not Available | Positive | 3915492 - 3915752 | 9561.44 |
| hypothetical protein | DWZ06_16220 | Not Available | Positive | 3915831 - 3916895 | 40208.2 |
| hypothetical protein | DWZ06_16225 | Not Available | Positive | 3916892 - 3917470 | 22841.8 |
| signal peptidase i | DWZ06_16230 | Not Available | Positive | 3917467 - 3918288 | 32002.6 |
| hypothetical protein | DWZ06_16235 | Not Available | Positive | 3918442 - 3918984 | 19666.0 |
| tolc family protein | DWZ06_16240 | Not Available | Positive | 3919116 - 3920513 | 51976.1 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ06_16245 | Not Available | Positive | 3920568 - 3921698 | 41358.6 |
| multidrug efflux rnd transporter permease subunit | DWZ06_16250 | Not Available | Positive | 3921703 - 3924819 | 112557.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

