Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate formimidoyltransferase | DWZ06_16155 | Not Available | Negative | 3903580 - 3904482 | 33343.4 |
| formiminotransferase-cyclodeaminase | DWZ06_16160 | Not Available | Negative | 3904430 - 3904543 | 4348.15 |
| urocanate hydratase | DWZ06_16165 | Not Available | Negative | 3904565 - 3906562 | 74543.1 |
| hypothetical protein | DWZ06_16170 | Not Available | Negative | 3906824 - 3907009 | 7426.38 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | DWZ06_16175 | Not Available | Negative | 3907088 - 3908305 | 46273.2 |
| duf2027 domain-containing protein | DWZ06_16180 | Not Available | Positive | 3908370 - 3909458 | 41096.4 |
| paai family thioesterase | DWZ06_16185 | Not Available | Positive | 3909486 - 3909896 | 14765.8 |
| histidine decarboxylase | DWZ06_16190 | Not Available | Negative | 3909976 - 3910584 | 22154.6 |
| acyl-coa dehydrogenase | DWZ06_16195 | Not Available | Negative | 3911043 - 3912749 | 63894.1 |
| four helix bundle protein | DWZ06_16200 | Not Available | Negative | 3912791 - 3913171 | 14337.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

