Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_01560 | Not Available | Positive | 369951 - 373418 | 133359.0 |
| atp-binding protein | DWZ06_01575 | Not Available | Negative | 375063 - 376334 | 49393.9 |
| iron-containing alcohol dehydrogenase | DWZ06_01580 | Not Available | Positive | 376558 - 377730 | 42892.9 |
| creatininase family protein | DWZ06_01585 | Not Available | Positive | 377730 - 378485 | 28548.2 |
| tonb-dependent receptor | DWZ06_01590 | Not Available | Positive | 379134 - 382475 | 123127.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_01595 | Not Available | Positive | 382497 - 384062 | 58966.7 |
| hypothetical protein | DWZ06_01605 | Not Available | Positive | 384481 - 384747 | 9807.32 |
| duf4221 domain-containing protein | DWZ06_01610 | Not Available | Positive | 384863 - 386017 | 45151.7 |
| duf1573 domain-containing protein | DWZ06_01615 | Not Available | Positive | 386014 - 386742 | 27146.5 |
| acyl-coa thioesterase | DWZ06_01620 | Not Available | Negative | 386807 - 387250 | 16848.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

