Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 109 protein 1 | DWZ06_16095 | Not Available | Negative | 3893759 - 3895174 | 53451.8 |
| general stress protein | DWZ06_16110 | Not Available | Positive | 3896413 - 3897093 | 26137.8 |
| duf3795 domain-containing protein | DWZ06_16115 | Not Available | Positive | 3897099 - 3897443 | 13108.9 |
| glutamine amidotransferase | DWZ06_16120 | Not Available | Positive | 3897446 - 3898063 | 22787.4 |
| hypothetical protein | DWZ06_16125 | Not Available | Positive | 3898166 - 3898372 | 7690.22 |
| nudix domain-containing protein | DWZ06_16130 | Not Available | Negative | 3899100 - 3899600 | 19013.3 |
| histidine ammonia-lyase | DWZ06_16135 | Not Available | Negative | 3899719 - 3901215 | 55180.9 |
| methenyltetrahydrofolate cyclohydrolase | DWZ06_16140 | Not Available | Negative | 3901250 - 3901873 | 22967.8 |
| imidazolonepropionase | DWZ06_16145 | Not Available | Negative | 3901894 - 3903138 | 44889.3 |
| gxxexxy protein | DWZ06_16150 | Not Available | Negative | 3903185 - 3903562 | 14789.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

