Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin flda | DWZ06_16035 | Not Available | Negative | 3884527 - 3885030 | 17963.1 |
| porin family protein | DWZ06_16040 | Not Available | Negative | 3885302 - 3885823 | 19772.5 |
| hypothetical protein | DWZ06_16045 | Not Available | Negative | 3885845 - 3886366 | 21224.9 |
| port family protein | DWZ06_16050 | Not Available | Negative | 3886731 - 3887369 | 22850.2 |
| ion transporter | DWZ06_16055 | Not Available | Negative | 3887598 - 3888356 | 28946.1 |
| port family protein | DWZ06_16060 | Not Available | Negative | 3888522 - 3889199 | 25186.4 |
| mechanosensitive ion channel family protein | DWZ06_16065 | Not Available | Negative | 3889233 - 3890078 | 30929.2 |
| alpha-1,2-fucosyltransferase | DWZ06_16075 | Not Available | Positive | 3890990 - 3891835 | 33694.5 |
| hypothetical protein | DWZ06_16085 | Not Available | Positive | 3892243 - 3892629 | 14711.7 |
| dde transposase | DWZ06_16090 | Not Available | Positive | 3892610 - 3893593 | 38559.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

