Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium:proton antiporter | DWZ06_15985 | Not Available | Negative | 3871431 - 3872882 | 51379.2 |
| hded family acid-resistance protein | DWZ06_15990 | Not Available | Positive | 3873077 - 3873640 | 20986.6 |
| translocation/assembly module tamb | DWZ06_15995 | Not Available | Positive | 3873705 - 3878165 | 166382.0 |
| agmatine deiminase family protein | DWZ06_16000 | Not Available | Positive | 3878220 - 3879245 | 39316.7 |
| acyltransferase | DWZ06_16005 | Not Available | Positive | 3879257 - 3880144 | 33260.4 |
| duf4251 domain-containing protein | DWZ06_16010 | Not Available | Positive | 3880259 - 3880849 | 21487.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DWZ06_16015 | Not Available | Negative | 3880943 - 3881470 | 19631.9 |
| aspartate--trna(asp/asn) ligase | DWZ06_16020 | Not Available | Negative | 3881645 - 3883408 | 66472.9 |
| thioredoxin | DWZ06_16025 | Not Available | Negative | 3883537 - 3883833 | 11478.8 |
| duf2023 family protein | DWZ06_16030 | Not Available | Negative | 3884166 - 3884510 | 13388.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

