Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain fatty acid--coa ligase | DWZ06_15935 | Not Available | Negative | 3861899 - 3863107 | 45859.1 |
| acyl carrier protein | DWZ06_15940 | Not Available | Negative | 3863121 - 3863345 | 8321.9 |
| ketoacyl-acp synthase iii | DWZ06_15945 | Not Available | Negative | 3863350 - 3864396 | 38020.6 |
| sdr family nad(p)-dependent oxidoreductase | DWZ06_15950 | Not Available | Negative | 3864403 - 3865149 | 26850.7 |
| acyl carrier protein | DWZ06_15955 | Not Available | Negative | 3865149 - 3865379 | 8720.25 |
| sialic acid o-acetyltransferase | DWZ06_15960 | Not Available | Negative | 3865397 - 3866032 | 22915.8 |
| degt/dnrj/eryc1/strs family aminotransferase | DWZ06_15965 | Not Available | Negative | 3866038 - 3867144 | 41131.6 |
| lipopolysaccharide biosynthesis protein | DWZ06_15970 | Not Available | Negative | 3867161 - 3868594 | 53538.3 |
| transcriptional regulator | DWZ06_15975 | Not Available | Negative | 3868635 - 3869435 | 30523.7 |
| aminopeptidase | DWZ06_15980 | Not Available | Negative | 3869943 - 3871319 | 51854.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

