Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DWZ06_15815 | Not Available | Negative | 3832603 - 3835443 | 108652.0 |
| beta-galactosidase | DWZ06_15820 | Not Available | Negative | 3835631 - 3837979 | 88282.5 |
| alpha-l-arabinofuranosidase | DWZ06_15825 | Not Available | Negative | 3837996 - 3840494 | 92446.4 |
| glycoside hydrolase | DWZ06_15830 | Not Available | Negative | 3840522 - 3842465 | 73176.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_15840 | Not Available | Negative | 3844272 - 3846014 | 67438.7 |
| dna-binding protein | DWZ06_15850 | Not Available | Positive | 3846719 - 3847702 | 38466.0 |
| site-specific integrase | DWZ06_15855 | Not Available | Positive | 3847757 - 3848896 | 44539.4 |
| hypothetical protein | DWZ06_15860 | Not Available | Positive | 3848877 - 3849188 | 11685.8 |
| atp-dependent helicase | DWZ06_15865 | Not Available | Negative | 3849237 - 3849481 | 9678.72 |
| hypothetical protein | DWZ06_15870 | Not Available | Positive | 3849698 - 3849934 | 9060.05 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

