Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyloxyacyl hydrolase | DWZ06_15760 | Not Available | Positive | 3814970 - 3816280 | 49681.4 |
| hypothetical protein | DWZ06_15770 | Not Available | Negative | 3817239 - 3817691 | 17225.2 |
| atp-dependent exonuclease | DWZ06_15775 | Not Available | Negative | 3817740 - 3820823 | 116248.0 |
| exonuclease subunit sbcd | DWZ06_15780 | Not Available | Negative | 3820820 - 3822022 | 44927.8 |
| hypothetical protein | DWZ06_15785 | Not Available | Positive | 3822194 - 3822469 | 10421.8 |
| addiction module toxin rele | DWZ06_15790 | Not Available | Positive | 3822459 - 3822800 | 12875.8 |
| glycosyl hydrolase | DWZ06_15795 | Not Available | Negative | 3822853 - 3825204 | 88840.2 |
| duf5110 domain-containing protein | DWZ06_15800 | Not Available | Negative | 3825258 - 3827717 | 94985.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_15805 | Not Available | Negative | 3827787 - 3829421 | 62512.4 |
| tonb-dependent receptor | DWZ06_15810 | Not Available | Negative | 3829443 - 3832391 | 108796.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

