Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DWZ06_15710 | Not Available | Negative | 3806142 - 3807032 | 33332.2 |
| nucleoside-diphosphate kinase | DWZ06_15715 | Not Available | Negative | 3807055 - 3807519 | 17401.2 |
| atp-dependent dna helicase recg | DWZ06_15720 | Not Available | Negative | 3807740 - 3809836 | 79778.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | DWZ06_15725 | Not Available | Negative | 3809838 - 3810497 | 24326.4 |
| dj-1 family protein | DWZ06_15730 | Not Available | Negative | 3810494 - 3811045 | 19256.6 |
| tonb family protein | DWZ06_15735 | Not Available | Negative | 3811049 - 3811942 | 31428.5 |
| biopolymer transporter exbd | DWZ06_15740 | Not Available | Negative | 3811952 - 3812371 | 16032.8 |
| mota/tolq/exbb proton channel family protein | DWZ06_15745 | Not Available | Negative | 3812378 - 3813091 | 25739.8 |
| pyridoxine 5'-phosphate synthase | DWZ06_15750 | Not Available | Negative | 3813091 - 3813807 | 26433.6 |
| nad kinase | DWZ06_15755 | Not Available | Positive | 3813926 - 3814798 | 32172.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

