Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWZ06_15655 | Not Available | Negative | 3788968 - 3792384 | 126398.0 |
| duf4974 domain-containing protein | DWZ06_15660 | Not Available | Negative | 3792529 - 3793515 | 38650.5 |
| rna polymerase sigma-70 factor | DWZ06_15665 | Not Available | Negative | 3793645 - 3794226 | 22722.7 |
| abc transporter atp-binding protein | DWZ06_15670 | Not Available | Negative | 3794266 - 3795900 | 61991.8 |
| putative transporter | DWZ06_15675 | Not Available | Negative | 3796016 - 3797686 | 60199.9 |
| methylmalonyl-coa mutase small subunit | DWZ06_15680 | Not Available | Positive | 3797972 - 3799882 | 70608.6 |
| methylmalonyl-coa mutase | DWZ06_15685 | Not Available | Positive | 3799892 - 3802042 | 79111.7 |
| gtp cyclohydrolase i fole | DWZ06_15690 | Not Available | Negative | 3802247 - 3802840 | 22693.7 |
| spor domain-containing protein | DWZ06_15695 | Not Available | Negative | 3802845 - 3803303 | 17067.7 |
| duf1599 domain-containing protein | DWZ06_15705 | Not Available | Negative | 3805486 - 3806028 | 20764.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

