Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase c39 | DWZ06_15605 | Not Available | Positive | 3771132 - 3771713 | 23420.5 |
| hypothetical protein | DWZ06_15610 | Not Available | Negative | 3771679 - 3772302 | 23177.9 |
| rna degradosome polyphosphate kinase | DWZ06_15615 | Not Available | Negative | 3772648 - 3774702 | 80560.6 |
| metallophosphoesterase | DWZ06_15620 | Not Available | Positive | 3774760 - 3775257 | 18707.5 |
| dtdp-glucose 4,6-dehydratase | DWZ06_15625 | Not Available | Positive | 3775306 - 3776445 | 43738.0 |
| tonb-dependent receptor | DWZ06_15630 | Not Available | Positive | 3776916 - 3780008 | 115070.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_15635 | Not Available | Positive | 3780021 - 3781838 | 68258.9 |
| duf4981 domain-containing protein | DWZ06_15640 | Not Available | Negative | 3782025 - 3785255 | 122560.0 |
| glycoside hydrolase | DWZ06_15645 | Not Available | Negative | 3785311 - 3787380 | 78022.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_15650 | Not Available | Negative | 3787412 - 3788947 | 58902.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

