Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactose mutarotase | DWZ06_01510 | Not Available | Negative | 345735 - 346757 | 38668.4 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_01515 | Not Available | Negative | 346847 - 348466 | 61972.6 |
| tonb-dependent receptor | DWZ06_01520 | Not Available | Negative | 348512 - 351565 | 113338.0 |
| alpha-galactosidase | DWZ06_01525 | Not Available | Negative | 351605 - 353632 | 76195.4 |
| response regulator | DWZ06_01530 | Not Available | Negative | 353836 - 357873 | 154598.0 |
| glycoside hydrolase family 97 protein | DWZ06_01535 | Not Available | Negative | 357957 - 359942 | 75303.1 |
| duf5107 domain-containing protein | DWZ06_01540 | Not Available | Negative | 359939 - 363280 | 128395.0 |
| mfs transporter | DWZ06_01545 | Not Available | Negative | 363293 - 364687 | 50675.3 |
| glycoside hydrolase family 95 protein | DWZ06_01550 | Not Available | Negative | 364873 - 367275 | 88968.7 |
| glycoside hydrolase family 92 protein | DWZ06_01555 | Not Available | Negative | 367450 - 369666 | 83771.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

