Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF29-13
Accession NumberQRSX00000000.1
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit c/d | DWZ06_00105 | Not Available | - | 22480 - 24039 | 59743.6 |
| nadh-quinone oxidoreductase subunit b | DWZ06_00110 | Not Available | - | 24036 - 24632 | 22081.9 |
| nadh-quinone oxidoreductase subunit a | DWZ06_00115 | Not Available | - | 24623 - 24973 | 13099.5 |
| hypothetical protein | DWZ06_00120 | Not Available | - | 25077 - 25454 | 14644.8 |
| trkh family potassium uptake protein | DWZ06_00125 | Not Available | - | 25557 - 27011 | 53478.3 |
| 5s ribosomal rna | Not Available | Not Available | + | 28012 - 28124 | Not Available |
| trk system potassium transporter trka | DWZ06_00130 | Not Available | - | 27011 - 28351 | 49307.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DWZ06_00135 | Not Available | - | 28364 - 30262 | 70238.9 |
| gscfa domain protein | DWZ06_00140 | Not Available | + | 30355 - 31341 | 38669.6 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DWZ06_00145 | Not Available | + | 31317 - 33782 | 92830.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
