Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DWZ06_15555 | Not Available | Negative | 3760905 - 3762206 | 50254.5 |
| hypothetical protein | DWZ06_15560 | Not Available | Negative | 3762309 - 3762491 | 6442.35 |
| hypothetical protein | DWZ06_15565 | Not Available | Negative | 3762573 - 3762758 | 6428.26 |
| hypothetical protein | DWZ06_15570 | Not Available | Positive | 3763182 - 3765098 | 75071.7 |
| duf3244 domain-containing protein | DWZ06_15575 | Not Available | Positive | 3765219 - 3765611 | 14489.4 |
| hypothetical protein | DWZ06_15580 | Not Available | Positive | 3765632 - 3765868 | 9326.37 |
| peptidase domain-containing abc transporter | DWZ06_15585 | Not Available | Positive | 3766023 - 3768224 | 83592.8 |
| hlyd family secretion protein | DWZ06_15590 | Not Available | Positive | 3768274 - 3769416 | 43823.5 |
| hypothetical protein | DWZ06_15595 | Not Available | Positive | 3769450 - 3769650 | 7419.48 |
| radical sam protein | DWZ06_15600 | Not Available | Positive | 3769628 - 3771139 | 58154.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

