Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:ubiquinone reductase (na(+)-transporting) subunit d | DWZ06_15505 | Not Available | Negative | 3747892 - 3748530 | 23121.2 |
| na(+)-translocating nadh-quinone reductase subunit c | DWZ06_15510 | Not Available | Negative | 3748549 - 3749223 | 24676.3 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit b | DWZ06_15515 | Not Available | Negative | 3749237 - 3750445 | 43554.0 |
| na(+)-translocating nadh-quinone reductase subunit a | DWZ06_15520 | Not Available | Negative | 3750474 - 3751823 | 49524.8 |
| atp-dependent helicase | DWZ06_15525 | Not Available | Negative | 3752068 - 3754167 | 79573.6 |
| hypothetical protein | DWZ06_15530 | Not Available | Positive | 3754209 - 3756035 | 71799.1 |
| duf3244 domain-containing protein | DWZ06_15535 | Not Available | Positive | 3756194 - 3756598 | 14848.9 |
| hypothetical protein | DWZ06_15540 | Not Available | Positive | 3756742 - 3757668 | 35822.5 |
| peptidase c39 | DWZ06_15545 | Not Available | Positive | 3757789 - 3758376 | 23231.6 |
| tonb-dependent receptor | DWZ06_15550 | Not Available | Negative | 3758395 - 3760701 | 86999.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

