Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin | DWZ06_15455 | Not Available | Negative | 3736088 - 3736618 | 19120.2 |
| rna-binding protein | DWZ06_15460 | Not Available | Positive | 3736912 - 3737157 | 9169.97 |
| beta-n-acetylhexosaminidase | DWZ06_15465 | Not Available | Negative | 3737341 - 3739662 | 87150.3 |
| dmt family transporter | DWZ06_15470 | Not Available | Negative | 3739708 - 3740622 | 32976.2 |
| duf1015 domain-containing protein | DWZ06_15475 | Not Available | Negative | 3740859 - 3742106 | 47087.9 |
| 3-phosphoglycerate dehydrogenase | DWZ06_15480 | Not Available | Negative | 3742215 - 3743135 | 33087.2 |
| phosphoserine aminotransferase | DWZ06_15485 | Not Available | Negative | 3743243 - 3744313 | 39557.6 |
| atp-dependent helicase | DWZ06_15490 | Not Available | Negative | 3744568 - 3745887 | 49651.0 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit f | DWZ06_15495 | Not Available | Negative | 3745978 - 3747252 | 47033.9 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit e | DWZ06_15500 | Not Available | Negative | 3747271 - 3747867 | 21276.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

