Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| k+-transporting atpase subunit a | DWZ06_15355 | Not Available | Positive | 3713165 - 3714871 | 61976.5 |
| k(+)-transporting atpase subunit b | DWZ06_15360 | Not Available | Positive | 3714905 - 3716938 | 72520.1 |
| k(+)-transporting atpase subunit c | DWZ06_15365 | Not Available | Positive | 3716952 - 3717521 | 20500.6 |
| hypothetical protein | DWZ06_15370 | Not Available | Positive | 3717795 - 3718496 | 25515.1 |
| hypothetical protein | DWZ06_15375 | Not Available | Positive | 3718513 - 3718758 | 9435.41 |
| had family hydrolase | DWZ06_15380 | Not Available | Negative | 3718755 - 3719444 | 26385.9 |
| chloramphenicol acetyltransferase | DWZ06_15385 | Not Available | Negative | 3719481 - 3720116 | 24088.7 |
| aspartate kinase | DWZ06_15390 | Not Available | Negative | 3720428 - 3721774 | 50704.7 |
| bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphatase | DWZ06_15395 | Not Available | Positive | 3722135 - 3724387 | 86515.2 |
| glycoside hydrolase family 15 protein | DWZ06_15400 | Not Available | Positive | 3724406 - 3726193 | 69848.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

