Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | DWZ06_15305 | Not Available | Negative | 3704726 - 3705325 | 22662.3 |
| Trna-met | Not Available | Not Available | Positive | 3705557 - 3705632 | Not Available |
| hypothetical protein | DWZ06_15315 | Not Available | Negative | 3705778 - 3706176 | 15076.2 |
| dmt family transporter | DWZ06_15320 | Not Available | Negative | 3706189 - 3707097 | 34141.1 |
| glycine/betaine abc transporter substrate-binding protein | DWZ06_15325 | Not Available | Negative | 3707242 - 3708084 | 31666.2 |
| proline/glycine betaine abc transporter permease | DWZ06_15330 | Not Available | Negative | 3708087 - 3708911 | 29538.8 |
| glycine betaine/l-proline abc transporter atp-binding protein | DWZ06_15335 | Not Available | Negative | 3708908 - 3710134 | 45636.3 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_15340 | Not Available | Positive | 3710436 - 3711773 | 49964.5 |
| o-acetyl-adp-ribose deacetylase | DWZ06_15345 | Not Available | Negative | 3712164 - 3712790 | 22651.2 |
| potassium-transporting atpase subunit f | DWZ06_15350 | Not Available | Positive | 3713058 - 3713138 | 3136.13 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

