Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_15250 | Not Available | Negative | 3687335 - 3689692 | 89050.7 |
| hypothetical protein | DWZ06_15255 | Not Available | Negative | 3689689 - 3694338 | 171846.0 |
| peptidylprolyl isomerase | DWZ06_15265 | Not Available | Positive | 3695049 - 3695894 | 31477.6 |
| insulinase family protein | DWZ06_15270 | Not Available | Positive | 3695907 - 3697151 | 47363.6 |
| mate family efflux transporter | DWZ06_15275 | Not Available | Positive | 3697245 - 3698555 | 48579.2 |
| response regulator | DWZ06_15280 | Not Available | Positive | 3698569 - 3701136 | 96893.3 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_15285 | Not Available | Positive | 3701238 - 3702620 | 51231.5 |
| hypothetical protein | DWZ06_15290 | Not Available | Positive | 3702905 - 3703210 | 10798.8 |
| rna pseudouridine synthase | DWZ06_15295 | Not Available | Negative | 3703275 - 3703946 | 25519.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DWZ06_15300 | Not Available | Negative | 3703948 - 3704694 | 25964.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

