Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol kinase glpk | DWZ06_15200 | Not Available | Negative | 3672948 - 3674444 | 55221.4 |
| transketolase family protein | DWZ06_15205 | Not Available | Negative | 3674470 - 3675408 | 33653.6 |
| transketolase | DWZ06_15210 | Not Available | Negative | 3675398 - 3676243 | 31469.7 |
| deor/glpr transcriptional regulator | DWZ06_15215 | Not Available | Negative | 3676586 - 3677341 | 27350.1 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DWZ06_15220 | Not Available | Negative | 3677353 - 3677967 | 22216.8 |
| duf5060 domain-containing protein | DWZ06_15225 | Not Available | Negative | 3678088 - 3679692 | 62101.2 |
| hybrid sensor histidine kinase/response regulator | DWZ06_15230 | Not Available | Negative | 3679857 - 3684179 | 165076.0 |
| hypothetical protein | DWZ06_15235 | Not Available | Negative | 3684393 - 3685073 | 24688.3 |
| arac family transcriptional regulator | DWZ06_15240 | Not Available | Positive | 3685285 - 3686187 | 35311.8 |
| nucleotidyltransferase | DWZ06_15245 | Not Available | Negative | 3686289 - 3687200 | 33797.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

