Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperonin groel | DWZ06_15150 | Not Available | Negative | 3659976 - 3661613 | 58129.1 |
| co-chaperone groes | DWZ06_15155 | Not Available | Negative | 3661655 - 3661927 | 9740.92 |
| 4fe-4s dicluster domain-containing protein | DWZ06_15160 | Not Available | Positive | 3662308 - 3663774 | 54253.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | DWZ06_15165 | Not Available | Positive | 3663783 - 3664817 | 38884.8 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | DWZ06_15170 | Not Available | Positive | 3664830 - 3666248 | 53347.0 |
| [fefe] hydrogenase h-cluster maturation gtpase hydf | DWZ06_15175 | Not Available | Positive | 3666312 - 3667502 | 43913.6 |
| histidine--trna ligase | DWZ06_15180 | Not Available | Negative | 3668082 - 3669446 | 50329.7 |
| sugar abc transporter substrate-binding protein | DWZ06_15185 | Not Available | Negative | 3669605 - 3670453 | 31277.0 |
| multidrug dmt transporter permease | DWZ06_15190 | Not Available | Negative | 3670461 - 3671477 | 36037.9 |
| fucose isomerase | DWZ06_15195 | Not Available | Negative | 3671490 - 3672914 | 52318.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

