Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWZ06_15095 | Not Available | Negative | 3647789 - 3649069 | 47792.6 |
| abc transporter permease | DWZ06_15100 | Not Available | Negative | 3649109 - 3650359 | 48071.8 |
| abc transporter permease | DWZ06_15105 | Not Available | Negative | 3650391 - 3651683 | 47601.7 |
| abc transporter atp-binding protein | DWZ06_15110 | Not Available | Negative | 3651727 - 3652392 | 24550.0 |
| abc transporter permease | DWZ06_15115 | Not Available | Negative | 3652511 - 3653791 | 49279.9 |
| abc transporter permease | DWZ06_15120 | Not Available | Negative | 3653807 - 3655108 | 49349.1 |
| hlyd family efflux transporter periplasmic adaptor subunit | DWZ06_15125 | Not Available | Negative | 3655235 - 3656482 | 46534.9 |
| carbonic anhydrase | DWZ06_15130 | Not Available | Negative | 3656801 - 3657340 | 19937.5 |
| crp/fnr family transcriptional regulator | DWZ06_15135 | Not Available | Negative | 3657531 - 3658115 | 22223.6 |
| Trna-thr | Not Available | Not Available | Positive | 3659655 - 3659728 | Not Available |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

