Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_01445 | Not Available | Positive | 323967 - 324608 | 23912.1 |
| hypothetical protein | DWZ06_01455 | Not Available | Negative | 325299 - 326378 | 40814.7 |
| s9 family peptidase | DWZ06_01460 | Not Available | Negative | 326612 - 327649 | 39546.7 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_01465 | Not Available | Negative | 327682 - 329124 | 53754.5 |
| duf4974 domain-containing protein | DWZ06_01475 | Not Available | Negative | 332610 - 333608 | 38231.8 |
| rna polymerase sigma-70 factor | DWZ06_01480 | Not Available | Negative | 333669 - 334259 | 23509.3 |
| alpha-galactosidase | DWZ06_01485 | Not Available | Negative | 335156 - 337312 | 82572.3 |
| arac family transcriptional regulator | DWZ06_01490 | Not Available | Positive | 337500 - 338396 | 34793.4 |
| 9-o-acetylesterase | DWZ06_01495 | Not Available | Negative | 338409 - 340361 | 72974.1 |
| beta-mannosidase | DWZ06_01505 | Not Available | Negative | 342763 - 345705 | 111423.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

