Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dabb family protein | DWZ06_15040 | Not Available | Negative | 3638183 - 3638482 | 11090.4 |
| uridine kinase | DWZ06_15045 | Not Available | Positive | 3638588 - 3639199 | 23271.3 |
| lytic transglycosylase f | DWZ06_15050 | Not Available | Positive | 3639196 - 3640578 | 52163.3 |
| hypothetical protein | DWZ06_15055 | Not Available | Negative | 3640591 - 3640797 | 8032.78 |
| hypothetical protein | DWZ06_15060 | Not Available | Negative | 3640809 - 3640997 | 6753.96 |
| hypothetical protein | DWZ06_15070 | Not Available | Negative | 3641674 - 3641841 | 6488.94 |
| pas domain-containing protein | DWZ06_15075 | Not Available | Negative | 3642083 - 3643378 | 49024.2 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_15080 | Not Available | Negative | 3643401 - 3644756 | 50734.5 |
| tolc family protein | DWZ06_15085 | Not Available | Negative | 3644842 - 3646326 | 56980.8 |
| abc transporter permease | DWZ06_15090 | Not Available | Negative | 3646514 - 3647785 | 48168.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

