Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | DWZ06_14990 | Not Available | Positive | 3629025 - 3629321 | 11303.9 |
| thioredoxin | DWZ06_14995 | Not Available | Positive | 3629325 - 3629783 | 17034.9 |
| nadh peroxidase | DWZ06_15000 | Not Available | Negative | 3629887 - 3630438 | 20566.4 |
| transcriptional repressor | DWZ06_15005 | Not Available | Negative | 3630516 - 3630926 | 15560.8 |
| nad(+) synthase | DWZ06_15010 | Not Available | Positive | 3631091 - 3633016 | 71124.6 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DWZ06_15015 | Not Available | Negative | 3633106 - 3634224 | 42179.7 |
| histidinol-phosphate transaminase | DWZ06_15020 | Not Available | Negative | 3634228 - 3635268 | 39610.4 |
| histidinol dehydrogenase | DWZ06_15025 | Not Available | Negative | 3635271 - 3636551 | 46572.2 |
| atp phosphoribosyltransferase | DWZ06_15030 | Not Available | Negative | 3636601 - 3637452 | 31336.4 |
| paai family thioesterase | DWZ06_15035 | Not Available | Negative | 3637681 - 3638172 | 18785.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

