Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4923 family protein | DWZ06_14940 | Not Available | Negative | 3615129 - 3615725 | 21300.9 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_14945 | Not Available | Negative | 3615931 - 3617646 | 63810.7 |
| tonb-dependent receptor | DWZ06_14950 | Not Available | Negative | 3617660 - 3620698 | 110970.0 |
| arac family transcriptional regulator | DWZ06_14955 | Not Available | Positive | 3620941 - 3623760 | 107456.0 |
| carboxylating nicotinate-nucleotide diphosphorylase | DWZ06_14960 | Not Available | Negative | 3623865 - 3624716 | 31226.1 |
| ribosomal rna large subunit methyltransferase h | DWZ06_14965 | Not Available | Positive | 3624797 - 3625270 | 18383.5 |
| endonuclease | DWZ06_14970 | Not Available | Negative | 3625347 - 3626357 | 38170.7 |
| aminoacyl-histidine dipeptidase | DWZ06_14975 | Not Available | Negative | 3626363 - 3627820 | 53122.6 |
| hypothetical protein | DWZ06_14980 | Not Available | Positive | 3628042 - 3628269 | 8190.17 |
| omph family outer membrane protein | DWZ06_14985 | Not Available | Positive | 3628292 - 3628906 | 23115.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

