Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yebc/pmpr family dna-binding transcriptional regulator | DWZ06_14890 | Not Available | Positive | 3605338 - 3606078 | 27834.7 |
| tigr03905 family tscpd domain-containing protein | DWZ06_14895 | Not Available | Positive | 3606080 - 3606325 | 9080.04 |
| hypothetical protein | DWZ06_14900 | Not Available | Negative | 3606441 - 3607061 | 23422.4 |
| helix-turn-helix domain-containing protein | DWZ06_14905 | Not Available | Negative | 3607062 - 3607593 | 20705.3 |
| molecular chaperone dnak | DWZ06_14910 | Not Available | Negative | 3607797 - 3609710 | 68301.1 |
| meta domain-containing protein | DWZ06_14915 | Not Available | Negative | 3610039 - 3610830 | 28653.9 |
| hypothetical protein | DWZ06_14920 | Not Available | Positive | 3610955 - 3612208 | 47788.1 |
| saccharopine dehydrogenase family protein | DWZ06_14925 | Not Available | Positive | 3612292 - 3613485 | 44966.5 |
| thioredoxin-dependent thiol peroxidase | DWZ06_14930 | Not Available | Positive | 3613553 - 3613999 | 16910.4 |
| recombinase reca | DWZ06_14935 | Not Available | Positive | 3614012 - 3615055 | 37366.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

