Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3990 domain-containing protein | DWZ06_14840 | Not Available | Positive | 3589690 - 3590163 | 18414.9 |
| hypothetical protein | DWZ06_14845 | Not Available | Positive | 3590160 - 3590387 | 8602.18 |
| glutathione peroxidase | DWZ06_14850 | Not Available | Negative | 3590418 - 3590957 | 20146.2 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_14855 | Not Available | Positive | 3591075 - 3592415 | 50137.7 |
| atp-binding protein | DWZ06_14860 | Not Available | Positive | 3592531 - 3593832 | 48986.9 |
| atp-dependent helicase | DWZ06_14865 | Not Available | Positive | 3593913 - 3597089 | 122633.0 |
| pd-(d/e)xk nuclease family protein | DWZ06_14870 | Not Available | Positive | 3597089 - 3599968 | 111014.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DWZ06_14875 | Not Available | Negative | 3600043 - 3600870 | 30651.1 |
| replicative dna helicase | DWZ06_14880 | Not Available | Positive | 3601132 - 3602688 | 57459.0 |
| phenylalanine--trna ligase subunit beta | DWZ06_14885 | Not Available | Positive | 3602842 - 3605304 | 91178.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

