Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | DWZ06_14780 | Not Available | Negative | 3579647 - 3580756 | 42339.2 |
| glycosyltransferase family 2 protein | DWZ06_14785 | Not Available | Negative | 3580756 - 3581631 | 34289.9 |
| o-antigen ligase domain-containing protein | DWZ06_14790 | Not Available | Negative | 3581631 - 3582890 | 48896.8 |
| alpha-1,2-fucosyltransferase | DWZ06_14795 | Not Available | Negative | 3582902 - 3583693 | 31410.3 |
| glycosyltransferase | DWZ06_14800 | Not Available | Negative | 3583701 - 3584516 | 31005.6 |
| hypothetical protein | DWZ06_14805 | Not Available | Negative | 3584530 - 3585897 | 51133.3 |
| hypothetical protein | DWZ06_14815 | Not Available | Negative | 3586530 - 3586913 | 14845.0 |
| upxy family transcription antiterminator | DWZ06_14820 | Not Available | Negative | 3586996 - 3587544 | 21158.1 |
| duf2442 domain-containing protein | DWZ06_14830 | Not Available | Negative | 3588538 - 3588954 | 16026.2 |
| duf3791 domain-containing protein | DWZ06_14835 | Not Available | Positive | 3589265 - 3589693 | 15954.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

